MRIQC: individual T1w report

Summary

Subject ID: 038_ExercisePre.
Date and time: 2018-05-06, 21:22.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.24863244122268377
cnr			4.814040513635778
efc			0.5692744756177547
fber			117.60892486572266
fwhm	avg		3.863666666666667
fwhm	x		3.77823
fwhm	y		4.08202
fwhm	z		3.73075
icvs	csf		0.1927423763165988
icvs	gm		0.4733568910885578
icvs	wm		0.33390073259484343
inu	med		0.9694036841392517
inu	range		0.28055475950241093
qi	1		0.0
qi	2		0.0008122676219813067
rpve	csf		26.25857951510309
rpve	gm		12.200044926553483
rpve	wm		19.818437312933106
size	x		180
size	y		256
size	z		256
snr	csf		2.69191639982586
snr	gm		10.680444864033
snr	total		10.555662559385247
snr	wm		18.294626414296882
snrd	csf		16.499585235621648
snrd	gm		32.889756997384524
snrd	total		34.334445054039854
snrd	wm		53.61399292911338
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.9397442407374612
summary	bg	mad	12.219552040100098
summary	bg	mean	46.288997650146484
summary	bg	median	45.26000213623047
summary	bg	n	2736642.0
summary	bg	p05	27.896396541595458
summary	bg	p95	68.35891532897948
summary	bg	stdv	12.673222541809082
summary	csf	k	0.48109024769504805
summary	csf	mad	121.46954345703125
summary	csf	mean	316.0733947753906
summary	csf	median	307.74896240234375
summary	csf	n	13521.0
summary	csf	p05	148.98312377929688
summary	csf	p95	501.86846923828125
summary	csf	stdv	114.31914520263672
summary	gm	k	0.27781996844179924
summary	gm	mad	55.029571533203125
summary	gm	mean	612.689208984375
summary	gm	median	613.4571533203125
summary	gm	n	40271.0
summary	gm	p05	514.9876708984375
summary	gm	p95	705.1651000976562
summary	gm	stdv	57.436702728271484
summary	wm	k	1.792329935114794
summary	wm	mad	41.07850646972656
summary	wm	mean	991.410888671875
summary	wm	median	1000.0039672851562
summary	wm	n	174141.0
summary	wm	p05	874.1053466796875
summary	wm	p95	1062.9522705078125
summary	wm	stdv	54.660919189453125
tpm	overlap	csf	0.21718208491802216
tpm	overlap	gm	0.5359986424446106
tpm	overlap	wm	0.5412901043891907
wm2max			0.6023863009573046

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	6c0c6815bdcd64444b863c31f52c765f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.