MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.24863244122268377
cnr4.814040513635778
efc0.5692744756177547
fber117.60892486572266
fwhmavg3.863666666666667
fwhmx3.77823
fwhmy4.08202
fwhmz3.73075
icvscsf0.1927423763165988
icvsgm0.4733568910885578
icvswm0.33390073259484343
inumed0.9694036841392517
inurange0.28055475950241093
qi10.0
qi20.0008122676219813067
rpvecsf26.25857951510309
rpvegm12.200044926553483
rpvewm19.818437312933106
sizex180
sizey256
sizez256
snrcsf2.69191639982586
snrgm10.680444864033
snrtotal10.555662559385247
snrwm18.294626414296882
snrdcsf16.499585235621648
snrdgm32.889756997384524
snrdtotal34.334445054039854
snrdwm53.61399292911338
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.9397442407374612
summarybgmad12.219552040100098
summarybgmean46.288997650146484
summarybgmedian45.26000213623047
summarybgn2736642.0
summarybgp0527.896396541595458
summarybgp9568.35891532897948
summarybgstdv12.673222541809082
summarycsfk0.48109024769504805
summarycsfmad121.46954345703125
summarycsfmean316.0733947753906
summarycsfmedian307.74896240234375
summarycsfn13521.0
summarycsfp05148.98312377929688
summarycsfp95501.86846923828125
summarycsfstdv114.31914520263672
summarygmk0.27781996844179924
summarygmmad55.029571533203125
summarygmmean612.689208984375
summarygmmedian613.4571533203125
summarygmn40271.0
summarygmp05514.9876708984375
summarygmp95705.1651000976562
summarygmstdv57.436702728271484
summarywmk1.792329935114794
summarywmmad41.07850646972656
summarywmmean991.410888671875
summarywmmedian1000.0039672851562
summarywmn174141.0
summarywmp05874.1053466796875
summarywmp951062.9522705078125
summarywmstdv54.660919189453125
tpmoverlapcsf0.21718208491802216
tpmoverlapgm0.5359986424446106
tpmoverlapwm0.5412901043891907
wm2max0.6023863009573046

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum6c0c6815bdcd64444b863c31f52c765f
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.